PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40925
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 192aa    MW: 22520.5 Da    PI: 8.7927
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40925genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-087594626
                -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                C++f+  G+Ck Gd C +aHg
  PEQU_40925 75 CPDFRM-GYCKKGDACEYAHG 94
                999999.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.6E-56995IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8596996IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-57097IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-67595IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-67594IPR000571Zinc finger, CCCH-type
SMARTSM0035636104127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MELRYLPSNS DSKAVDLANP HLDPYSCDSF RIYQFKVKLC TRGRSHDWTE CPFAHPGEKA  60
RRRDPRKFQY SGISCPDFRM GYCKKGDACE YAHGVFESWL HPSKYRTQSC KDGRACRRRV  120
CFFAHTPEQL RLPPNQESSS KSWINEMASS SQRVRLEKTE EPEMRRIERK TEVVMNDGRE  180
SPDFGWVLDL LK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015966423.11e-68PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9FU273e-67C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0V0HY581e-68A0A0V0HY58_SOLCH; Putative zinc finger CCCH domain-containing protein 20-like
STRINGPGSC0003DMT4000654631e-67(Solanum tuberosum)
STRINGSi024826m3e-67(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.18e-68C3H family protein